The Model Context Protocol (MCP) has been proposed as a unifying standard for connecting large language models (LLMs) with external tools and resources, promising the same role for AI integration that HTTP and USB played for the Web and peripherals. Yet, despite rapid adoption and hype, its trajectory remains uncertain. Are MCP marketplaces truly growing, or merely inflated by placeholders and abandoned prototypes? Are servers secure and privacy-preserving, or do they expose users to systemic risks? And do clients converge on standardized protocols, or remain fragmented across competing designs? In this paper, we present the first large-scale empirical study of the MCP ecosystem. We design and implement MCPCrawler, a systematic measurement framework that collects and normalizes data from six major markets. Over a 14-day campaign, MCPCrawler aggregated 17,630 raw entries, of which 8,401 valid projects (8,060 servers and 341 clients) were analyzed. Our results reveal that more than half of listed projects are invalid or low-value, that servers face structural risks including dependency monocultures and uneven maintenance, and that clients exhibit a transitional phase in protocol and connection patterns. Together, these findings provide the first evidence-based view of the MCP ecosystem, its risks, and its future trajectory.

As function approximators, deep neural networks have served as an effective tool to represent various signal types. Recent approaches utilize multi-layer perceptrons (MLPs) to learn a nonlinear mapping from a coordinate to its corresponding signal, facilitating the learning of continuous neural representations from discrete data points. Despite notable successes in learning diverse signal types, coordinate-based MLPs often face issues of overfitting and limited generalizability beyond the training region, resulting in subpar extrapolation performance. This study addresses scenarios where the underlying true signals exhibit periodic properties, either spatially or temporally. We propose a novel network architecture, which extracts periodic patterns from measurements and leverages this information to represent the signal, thereby enhancing generalization and improving extrapolation performance. We demonstrate the efficacy of the proposed method through comprehensive experiments, including the learning of the periodic solutions for differential equations, and time series imputation (interpolation) and forecasting (extrapolation) on real-world datasets.

Post-processing is crucial for the automatic evaluation of LLMs in fill-in-the-middle (FIM) code generation due to the frequent presence of extraneous code in raw outputs. This extraneous generation suggests a lack of awareness regarding output boundaries, requiring truncation for effective evaluation. The determination of an optimal truncation strategy, however, often proves intricate, particularly when the scope includes several programming languages. This study investigates the necessity of post-processing instruction-tuned LLM outputs. Our findings reveal that supervised fine-tuning significantly enhances FIM code generation, enabling LLMs to generate code that seamlessly integrates with the surrounding context. Evaluating our fine-tuned \texttt{Qwen2.5-Coder} (base and instruct) models on HumanEval Infilling and SAFIM benchmarks demonstrates improved performances without post-processing, especially when the \emph{middle} consist of complete lines. However, post-processing of the LLM outputs remains necessary when the \emph{middle} is a random span of code.

Concepts such as objects, patterns, and shapes are how humans understand the world. Building on this intuition, concept-based explainability methods aim to study representations learned by deep neural networks in relation to human-understandable concepts. Here, Concept Activation Vectors (CAVs) are an important tool and can identify whether a model learned a concept or not. However, the computational cost and time requirements of existing CAV computation pose a significant challenge, particularly in large-scale, high-dimensional architectures. To address this limitation, we introduce FastCAV, a novel approach that accelerates the extraction of CAVs by up to 63.6x (on average 46.4x). We provide a theoretical foundation for our approach and give concrete assumptions under which it is equivalent to established SVM-based methods. Our empirical results demonstrate that CAVs calculated with FastCAV maintain similar performance while being more efficient and stable. In downstream applications, i.e., concept-based explanation methods, we show that FastCAV can act as a replacement leading to equivalent insights. Hence, our approach enables previously infeasible investigations of deep models, which we demonstrate by tracking the evolution of concepts during model training.

Event-based object detection has gained increasing attention due to its advantages such as high temporal resolution, wide dynamic range, and asynchronous address-event representation. Leveraging these advantages, Spiking Neural Networks (SNNs) have emerged as a promising approach, offering low energy consumption and rich spatiotemporal dynamics. To further enhance the performance of event-based object detection, this study proposes a novel hybrid spike vision Transformer (HsVT) model. The HsVT model integrates a spatial feature extraction module to capture local and global features, and a temporal feature extraction module to model time dependencies and long-term patterns in event sequences. This combination enables HsVT to capture spatiotemporal features, improving its capability to handle complex event-based object detection tasks. To support research in this area, we developed and publicly released The Fall Detection Dataset as a benchmark for event-based object detection tasks. This dataset, captured using an event-based camera, ensures facial privacy protection and reduces memory usage due to the event representation format. We evaluated the HsVT model on GEN1 and Fall Detection datasets across various model sizes. Experimental results demonstrate that HsVT achieves significant performance improvements in event detection with fewer parameters.

Dropout, a network operator, when enabled is likely to dramatically impact the performance of Flash-Attention, which in turn increases the end-to-end training time of Large-Language-Models (LLMs). The main contributor to such performance degradation is the Random Number Generation (RNG) phase that is traditionally fused into the Flash-Attention kernel. As RNG and Attention have the same hardware bottlenecks, RNG latency can hardly be hidden within the Attention kernel. We propose overlapping RNG with previous GEMM layers in the network to hide RNG runtime and improve end-to-end performance. RNG and GEMM have distinct resource requirements and hardware bottlenecks, so they can run in parallel without compromising each other's performance. Our fine-grained performance model, cross-validated by silicon results, shows 1.14x speedup on one transformer block (including multi-head attention and feed-forward layers) for Llama2, and up to 1.23x speedup when varying workload sizes, on GH100 GPUs with FP8 precision. Further, we extend our theoretical model to different RNG implementations and hardware architectures, and discuss the widely applicable benefits for overlapping RNG with GEMM layers.

The research builds and evaluates the adversarial potential to introduce copied code or hallucinated AI recommendations for malicious code in popular code repositories. While foundational large language models (LLMs) from OpenAI, Google, and Anthropic guard against both harmful behaviors and toxic strings, previous work on math solutions that embed harmful prompts demonstrate that the guardrails may differ between expert contexts. These loopholes would appear in mixture of expert's models when the context of the question changes and may offer fewer malicious training examples to filter toxic comments or recommended offensive actions. The present work demonstrates that foundational models may refuse to propose destructive actions correctly when prompted overtly but may unfortunately drop their guard when presented with a sudden change of context, like solving a computer programming challenge. We show empirical examples with trojan-hosting repositories like GitHub, NPM, NuGet, and popular content delivery networks (CDN) like jsDelivr which amplify the attack surface. In the LLM's directives to be helpful, example recommendations propose application programming interface (API) endpoints which a determined domain-squatter could acquire and setup attack mobile infrastructure that triggers from the naively copied code. We compare this attack to previous work on context-shifting and contrast the attack surface as a novel version of "living off the land" attacks in the malware literature. In the latter case, foundational language models can hijack otherwise innocent user prompts to recommend actions that violate their owners' safety policies when posed directly without the accompanying coding support request.

Infinite mixture models are commonly used for clustering. One can sample from the posterior of mixture assignments by Monte Carlo methods or find its maximum a posteriori solution by optimization. However, in some problems the posterior is diffuse and it is hard to interpret the sampled partitionings. In this paper, we introduce novel statistics based on block sizes for representing sample sets of partitionings and feature allocations. We develop an element-based definition of entropy to quantify segmentation among their elements. Then we propose a simple algorithm called entropy agglomeration (EA) to summarize and visualize this information. Experiments on various infinite mixture posteriors as well as a feature allocation dataset demonstrate that the proposed statistics are useful in practice.

Prompt optimization aims to find the best prompt to a large language model (LLM) for a given task. LLMs have been successfully used to help find and improve prompt candidates for single-step tasks. However, realistic tasks for agents are multi-step and introduce new challenges: (1) Prompt content is likely to be more extensive and complex, making it more difficult for LLMs to analyze errors, (2) the impact of an individual step is difficult to evaluate, and (3) different people may have varied preferences about task execution. While humans struggle to optimize prompts, they are good at providing feedback about LLM outputs; we therefore introduce a new LLM-driven discrete prompt optimization framework that incorporates human-designed feedback rules about potential errors to automatically offer direct suggestions for improvement. Our framework is stylized as a genetic algorithm in which an LLM generates new candidate prompts from a parent prompt and its associated feedback; we use a learned heuristic function that predicts prompt performance to efficiently sample from these candidates. This approach significantly outperforms both human-engineered prompts and several other prompt optimization methods across eight representative multi-step tasks (an average 27.7% and 28.2% improvement to current best methods on GPT-3.5 and GPT-4, respectively). We further show that the score function for tasks can be modified to better align with individual preferences. We believe our work can serve as a benchmark for automatic prompt optimization for LLM-driven multi-step tasks. Datasets and Codes are available at https://github.com/yongchao98/PROMST. Project Page is available at https://yongchao98.github.io/MIT-REALM-PROMST.

Digital twins (DTs) are revolutionizing the biotechnology industry by enabling sophisticated digital representations of biological assets, microorganisms, drug development processes, and digital health applications. However, digital twinning at micro and nano scales, particularly in modeling complex entities like bacteria, presents significant challenges in terms of requiring advanced Internet of Things (IoT) infrastructure and computing approaches to achieve enhanced accuracy and scalability. In this work, we propose a novel framework that integrates the Internet of Bio-Nano Things (IoBNT) with advanced machine learning techniques, specifically convolutional neural networks (CNN) and federated learning (FL), to effectively tackle the identified challenges. Within our framework, IoBNT devices are deployed to gather image-based biological data across various physical environments, leveraging the strong capabilities of CNNs for robust machine vision and pattern recognition. Subsequently, FL is utilized to aggregate insights from these disparate data sources, creating a refined global model that continually enhances accuracy and predictive reliability, which is crucial for the effective deployment of DTs in biotechnology. The primary contribution is the development of a novel framework that synergistically combines CNN and FL, augmented by the capabilities of the IoBNT. This novel approach is specifically tailored to enhancing DTs in the biotechnology industry. The results showcase enhancements in the reliability and safety of microorganism DTs, while preserving their accuracy. Furthermore, the proposed framework excels in energy efficiency and security, offering a user-friendly and adaptable solution. This broadens its applicability across diverse sectors, including biotechnology and pharmaceutical industries, as well as clinical and hospital settings.